CoBi Core Resources

Upcoming Events

BME Visiting Professor
"Engineering Microenvironments for Stem Cell Propagation and Differentiation"
Speaker: Raj R. Rao, Ph.D.
Associate Professor
Chemical and Life Science Engineering
Human and Molecular Genetics
Virginia Commonwealth University
Richmond, VA
Date: May 24, 2012
Location: LRI, NC1-202



 

CoBi Core personnel have the skill sets to utilize a variety of free and open source packages as well as proprietary software (provided that the project complies licensing restrictions):

 Image Segmentation: ITK-SNAP, 3D Slicer, VolSuite,  Geomata
Solid Modeling: Rhino (McNeel North America, Seattle, WA), SALOME
Mesh Generation: Truegrid (XYZ Scientific Applications, Inc., Livermore, CA)
Finite Element Analysis: Abaqus (Simulia, Providence, RI), FEBio
Numerical Analysis & Optimization: Matlab (The Mathworks, Inc., Natick, MA), SciPy
Simulation Automation: Matlab (The Mathworks, Inc., Natick, MA), Python
Software Development: Python, C/C++, QT
Musculoskeletal Modeling and Simulation: OpenSim

Hardware platforms to conduct simulations range from workstations to in-house clusters and supercomputing facilities:

Full access to a 4 node Linux cluster with node charactersitics:
  • Dell PowerEdge SC1425 (Dell Inc., Round Rock, TX)
  • OPERATING SYSTEM: Linux (CentOS 5.5)
  • KERNEL: Linux version 2.6.18-194.3.1.el5
  • CPUS: 2 x Intel(R) Xeon(TM) CPU 3.40GHz
  • MEMORY: 6GB
  • HDD: ~ 400 GB
Access to Ohio Supercomputer Center resources (for academic research problems)

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