CoBi Core personnel have the skill sets to utilize a variety of free and open source packages as well as proprietary software (provided that the project complies licensing restrictions):
Image Segmentation:
ITK-SNAP,
3D Slicer,
VolSuite, Geomata
Solid Modeling: Rhino (McNeel North America, Seattle, WA),
SALOME
Mesh Generation: Truegrid (XYZ Scientific Applications, Inc., Livermore, CA)
Finite Element Analysis: Abaqus (Simulia, Providence, RI),
FEBio
Numerical Analysis & Optimization: Matlab (The Mathworks, Inc., Natick, MA),
SciPy
Simulation Automation: Matlab (The Mathworks, Inc., Natick, MA),
Python
Software Development:
Python, C/C++,
QT
Musculoskeletal Modeling and Simulation:
OpenSim
Hardware platforms to conduct simulations range from workstations to in-house clusters and supercomputing facilities:
Full access to a 4 node Linux cluster with node charactersitics:
- Dell PowerEdge SC1425 (Dell Inc., Round Rock, TX)
- OPERATING SYSTEM: Linux (CentOS 5.5)
- KERNEL: Linux version 2.6.18-194.3.1.el5
- CPUS: 2 x Intel(R) Xeon(TM) CPU 3.40GHz
- MEMORY: 6GB
- HDD: ~ 400 GB
Access to
Ohio Supercomputer Center resources (for academic research problems)
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